Index _ | A | B | C | D | E | F | G | I | M | O | P | R | S _ _MsprimeEngine (class in stdferdowsim.engines) _SLiMEngine (class in stdferdowsim.slim_engine) A add_dfe() (stdferdowsim.Contig method) add_single_site() (stdferdowsim.Contig method) Annotation (class in stdferdowsim) asdict() (stdferdowsim.Population method) assert_valid() (stdferdowsim.Citation method) B because() (stdferdowsim.Citation method) C Chromosome (class in stdferdowsim) Citation (class in stdferdowsim) clear_dfes() (stdferdowsim.Contig method) Contig (class in stdferdowsim) D DemographicModel (class in stdferdowsim) description (stdferdowsim.engines._MsprimeEngine attribute) (stdferdowsim.slim_engine._SLiMEngine attribute) DFE (class in stdferdowsim) dfe_breakpoints() (stdferdowsim.Contig method) download() (stdferdowsim.Annotation method) E Engine (class in stdferdowsim) F fetch_bibtex() (stdferdowsim.Citation method) from_data() (stdferdowsim.Genome static method) G Genome (class in stdferdowsim) get_annotations() (stdferdowsim.Species method) get_chromosome() (stdferdowsim.Genome method) get_chromosome_annotations() (stdferdowsim.Annotation method) get_contig() (stdferdowsim.Species method) get_default_engine() (in module stdferdowsim) get_demographic_model() (stdferdowsim.Species method) get_dfe() (stdferdowsim.Species method) get_engine() (in module stdferdowsim) get_sample_sets() (stdferdowsim.DemographicModel method) get_samples() (stdferdowsim.DemographicModel method) get_species() (in module stdferdowsim) get_version() (stdferdowsim.Engine method) I id (stdferdowsim.engines._MsprimeEngine attribute) (stdferdowsim.slim_engine._SLiMEngine attribute) is_cached() (stdferdowsim.Annotation method) is_neutral (stdferdowsim.Contig property) (stdferdowsim.MutationType property) IsolationWithMigration (class in stdferdowsim) M mean_gene_conversion_fraction (stdferdowsim.Genome property) mean_mutation_rate (stdferdowsim.Genome property) mean_recombination_rate (stdferdowsim.Genome property) merge() (stdferdowsim.Citation static method) mutation_types() (stdferdowsim.Contig method) MutationType (class in stdferdowsim) O origin (stdferdowsim.Contig property) P PiecewiseConstantSize (class in stdferdowsim) Population (class in stdferdowsim) R range_gene_conversion_lengths (stdferdowsim.Genome property) recap_and_rescale() (stdferdowsim.slim_engine._SLiMEngine method) register_engine() (in module stdferdowsim) register_qc() (stdferdowsim.DemographicModel method) (stdferdowsim.DFE method) S selective_sweep() (in module stdferdowsim) simulate() (stdferdowsim.Engine method) (stdferdowsim.engines._MsprimeEngine method) (stdferdowsim.slim_engine._SLiMEngine method) Species (class in stdferdowsim) species_contig() (stdferdowsim.Contig static method)